STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yhbU_1Putative protease YhbU precursor. (332 aa)    
Predicted Functional Partners:
BVIR_2626
Peptidase family U32.
 
 0.995
BVIR_2624
SCP-2 sterol transfer family protein.
 
  
 0.967
BVIR_2612
NnrS protein.
 
    0.673
ubiD
3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Belongs to the UbiD family.
 
    0.604
BVIR_1975
Macrocin-O-methyltransferase (TylF).
  
  
 0.601
hemN_1
Oxygen-independent coproporphyrinogen-III oxidase 1.
 
    0.514
hemN_2
Oxygen-independent coproporphyrinogen-III oxidase; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
 
    0.410
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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