STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prsD_2Type I secretion system ATP-binding protein PrsD. (581 aa)    
Predicted Functional Partners:
prsE_3
Type I secretion system membrane fusion protein PrsE.
  
 0.952
apxIA
RTX-I toxin determinant A from serotypes 1/9.
 
 
 0.835
prsE_1
Type I secretion system membrane fusion protein PrsE.
  
 0.825
artM_3
Glutamine transport ATP-binding protein GlnQ.
 
     
0.803
prsE_2
Type I secretion system membrane fusion protein PrsE.
  
 0.771
fhuC_3
Iron(3+)-hydroxamate import ATP-binding protein FhuC.
 
     
0.596
BVIR_2699
Hypothetical protein.
     
 0.496
bepC_2
Outer membrane efflux protein BepC precursor.
 
  
 0.477
potA_2
Spermidine/putrescine import ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
     
0.474
prsD_1
Type I secretion system ATP-binding protein PrsD.
  
  
 
0.437
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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