STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVIR_2710Hypothetical protein. (300 aa)    
Predicted Functional Partners:
BVIR_3197
Hypothetical protein.
 
  
 0.685
BVIR_621
Helix-turn-helix protein.
  
     0.685
BVIR_1887
Anaerobic benzoate catabolism transcriptional regulator.
  
     0.658
hisS_2
Histidine--tRNA ligase.
 
    0.576
BVIR_153
Methyltransferase domain protein.
 
     0.564
envZ_1
Osmolarity sensor protein EnvZ.
  
 
   0.546
BVIR_2711
Hypothetical protein.
       0.503
yfdH
Hypothetical protein.
       0.503
tme
NADP-dependent malic enzyme.
  
  
 0.466
BVIR_3020
Hypothetical protein.
   
    0.457
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.