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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sucD_2Succinyl-CoA ligase [ADP-forming] subunit alpha. (906 aa)    
Predicted Functional Partners:
porB
Pyruvate-flavodoxin oxidoreductase.
  
 
 0.732
glpR_1
Glycerol-3-phosphate regulon repressor.
    
   0.689
glpR_2
Glycerol-3-phosphate regulon repressor.
    
   0.689
glcR_2
HTH-type transcriptional repressor GlcR.
    
   0.689
glcR_1
HTH-type transcriptional repressor GlcR.
    
   0.689
BVIR_704
Indolepyruvate ferredoxin oxidoreductase.
   
 
 0.563
rnc
Ribonuclease 3; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
  
    0.557
hdaH
Histone deacetylase-like amidohydrolase.
 
     0.553
tme
NADP-dependent malic enzyme.
     
 0.548
cheA_1
Chemotaxis protein CheA.
  
 
 0.535
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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