STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
algA_2Alginate biosynthesis protein AlgA; Belongs to the mannose-6-phosphate isomerase type 2 family. (469 aa)    
Predicted Functional Partners:
algC
Phosphomannomutase/phosphoglucomutase.
 
 
 0.966
wcaJ
UDP-glucose:undecaprenyl-phosphate glucose-1-phosphate transferase.
  
  
 0.962
pgi_1
Glucose-6-phosphate isomerase.
  
 
 0.952
yihS
Cellobiose 2-epimerase.
    
 0.947
fbp
Fructose-1,6-bisphosphatase class 1; Belongs to the FBPase class 1 family.
   
 0.939
glmS_1
Glutamine--fructose-6-phosphate aminotransferase [isomerizing]; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
    
 0.922
algA_1
Alginate biosynthesis protein AlgA; Belongs to the mannose-6-phosphate isomerase type 2 family.
 
  
 
0.920
manX
PTS system mannose-specific EIIAB component.
    
 0.920
glpX
Fructose-1,6-bisphosphatase class 2.
     
 0.914
pfkB
Putative phosphofructokinase PfkB; Belongs to the carbohydrate kinase PfkB family.
     
  0.900
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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