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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVIR_2746Ribokinase. (305 aa)    
Predicted Functional Partners:
BVIR_2813
Phasin protein.
  
     0.685
hisA_1
1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase.
  
    0.650
BVIR_3207
Hypothetical protein.
  
   
 0.632
BVIR_1500
acyl-CoA synthetase.
  
    0.622
BVIR_2561
Xylose isomerase-like TIM barrel.
  
  
 0.561
tme
NADP-dependent malic enzyme.
  
  
 0.544
BVIR_751
Hypothetical protein.
  
     0.521
ybiR
Inner membrane protein YbiR.
  
  
 0.508
porB
Pyruvate-flavodoxin oxidoreductase.
     
 0.507
BVIR_827
Hypothetical protein.
  
     0.502
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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