STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cnrH_2ECF RNA polymerase sigma factor SigW; Belongs to the sigma-70 factor family. ECF subfamily. (227 aa)    
Predicted Functional Partners:
hag
Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
 
   
 0.637
BVIR_266
Flagellar hook-associated protein FlgL.
  
   
 0.593
fliD
Flagellar hook-associated protein 2; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.
 
   
 0.562
BVIR_2628
Hypothetical protein.
  
 
 0.525
chrR_1
Anti-sigma-E factor ChrR.
 
 
 0.505
chrR_2
Anti-sigma-E factor ChrR.
 
 
 0.503
ptrA
Protease 3 precursor; Belongs to the peptidase M16 family.
  
    0.469
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.451
rpoB_1
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.438
fecI_1
ECF RNA polymerase sigma factor SigE; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.416
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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