STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
appA_3Oligopeptide-binding protein AppA precursor. (620 aa)    
Predicted Functional Partners:
appA_2
Oligopeptide-binding protein AppA precursor.
 
  
 
0.972
yejB
Inner membrane ABC transporter permease protein YejB.
  
 0.942
yejE
Inner membrane ABC transporter permease protein YejE.
 
  
 0.925
gsiA_3
Glutathione import ATP-binding protein GsiA; Belongs to the ABC transporter superfamily.
 
  
 0.902
gsiA_2
Glutathione import ATP-binding protein GsiA; Belongs to the ABC transporter superfamily.
 
  
 0.755
gsiB
Glutathione-binding protein GsiB precursor.
 
 
0.549
BVIR_2781
tRNA(fMet)-specific endonuclease VapC.
       0.515
BVIR_2780
Hypothetical protein.
       0.513
tcyC_1
Glutamine transport ATP-binding protein GlnQ.
  
 
 0.451
appA_1
Oligopeptide-binding protein AppA precursor.
  
  
 
0.440
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.