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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bfrBacterioferritin; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family. (159 aa)    
Predicted Functional Partners:
BVIR_2811
BFD-like [2Fe-2S] binding domain protein.
  
 
 0.937
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
     
 0.928
BVIR_2196
Heme oxygenase.
     
 0.903
BVIR_501
Hypothetical protein.
   
  
 0.732
puhA
Reaction center protein H chain; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.
   
  
 0.626
fixP
Cbb3-type cytochrome c oxidase subunit FixP; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
   
  
 0.575
cheA_1
Chemotaxis protein CheA.
   
  
 0.489
pdtaR_2
Putative transcriptional regulatory protein pdtaR.
   
  
 0.474
katE
Catalase C; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
  
 0.410
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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