Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BVIR_296Hypothetical protein. (149 aa)    
Predicted Functional Partners:
ramA
2-oxoglutaramate amidase.
       0.832
grxC
Glutaredoxin-3; Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins.
       0.577
cobT
Aerobic cobaltochelatase subunit CobT.
  
     0.537
BVIR_740
Hypothetical protein; Belongs to the UPF0262 family.
  
     0.491
BVIR_235
Thiamine-phosphate synthase.
  
    0.483
BVIR_293
Ribose-phosphate pyrophosphokinase.
       0.459
BVIR_2554
N-formylglutamate amidohydrolase.
 
     0.445
BVIR_292
Biotin biosynthesis protein BioC.
       0.426
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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