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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mepA_1Penicillin-insensitive murein endopeptidase precursor. (304 aa)    
Predicted Functional Partners:
aroC
Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.
 
  
 0.847
BVIR_96
Peptidase M15.
  
     0.746
BVIR_3319
Vacuole effluxer Atg22 like protein.
      0.674
prmB
50S ribosomal protein L3 glutamine methyltransferase; Belongs to the protein N5-glutamine methyltransferase family.
      0.666
ycjX
Hypothetical protein.
  
     0.661
BVIR_2987
Hypothetical protein.
 
     0.637
ycjF
Hypothetical protein.
  
     0.628
glk
Glucokinase; Belongs to the bacterial glucokinase family.
      0.588
BVIR_797
Hypothetical protein.
  
     0.491
BVIR_824
Murein L,D-transpeptidase.
  
     0.466
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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