STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yecDIsochorismatase family protein YecD. (247 aa)    
Predicted Functional Partners:
gatA_3
Allophanate hydrolase.
 
  
  0.925
accA1_3
Acetyl-/propionyl-coenzyme A carboxylase alpha chain.
  
 
 0.907
BVIR_3005
Homoserine kinase.
 
    0.781
BVIR_2999
Spermidine/putrescine ABC transporter periplasmic substrate-binding protein.
 
     0.671
dgdA
2,2-dialkylglycine decarboxylase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
    0.633
ycaC_2
Streptothricin hydrolase.
  
     0.571
fabG_8
3-oxoacyl-[acyl-carrier-protein] reductase FabG.
 
   0.563
nadE_1
Glutamine-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
 
 0.546
potA_3
Spermidine/putrescine import ATP-binding protein PotA; Belongs to the ABC transporter superfamily.
 
     0.502
rutF
FMN reductase (NADH) RutF.
 
  
 0.494
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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