STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydaF_2Putative ribosomal N-acetyltransferase YdaF. (193 aa)    
Predicted Functional Partners:
ptrA
Protease 3 precursor; Belongs to the peptidase M16 family.
  
    0.740
thrC_1
Threonine synthase.
       0.737
ydaF_3
Putative ribosomal N-acetyltransferase YdaF.
  
   
 0.689
glnL_3
Nitrogen regulation protein NR(II).
  
     0.538
rnc
Ribonuclease 3; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.532
BVIR_7
Hypothetical protein.
  
     0.512
BVIR_738
Hypothetical protein.
  
     0.503
BVIR_3064
Blue-light-activated protein.
       0.484
BVIR_3317
Acetyltransferase (GNAT) family protein.
 
 
 0.448
ydaF_1
Putative ribosomal N-acetyltransferase YdaF.
  
   
 0.442
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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