Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BVIR_307Collagen triple helix repeat (20 copies). (165 aa)    
Predicted Functional Partners:
ftsK_1
DNA translocase FtsK.
   
 
 0.759
btuB
Vitamin B12 transporter BtuB precursor.
    
   0.700
BVIR_3291
Hypothetical protein.
    
   0.690
BVIR_2359
Trypsin.
  
   
 0.656
BVIR_3103
Putative aminoacrylate hydrolase RutD.
  
     0.608
BVIR_2898
Hypothetical protein.
  
     0.570
BVIR_1421
Thermophilic serine proteinase precursor.
  
 
 0.533
BVIR_2986
Hypothetical protein.
    
   0.524
BVIR_328
Demethylspheroidene O-methyltransferase.
  
     0.508
BVIR_349
Alpha/beta hydrolase family protein.
  
     0.507
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.