Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BVIR_308Murein DD-endopeptidase MepM. (638 aa)    
Predicted Functional Partners:
pbpD_2
Penicillin-binding protein 1F.
  
   
 0.675
mrcA_1
Penicillin-binding protein 1A.
  
   
 0.666
pbpD_1
Penicillin-binding protein 2D.
  
   
 0.653
BVIR_43
TPR repeat-containing protein YfgC precursor.
  
     0.591
BVIR_1548
Rare lipoprotein A.
 
  
 0.551
penA
Peptidoglycan synthase FtsI.
 
   
 0.534
BVIR_307
Collagen triple helix repeat (20 copies).
  
  
 0.495
slt_2
Soluble lytic murein transglycosylase precursor.
 
   
 0.487
lepB_1
Signal peptidase I; Belongs to the peptidase S26 family.
 
  
 0.472
BVIR_745
Hypothetical protein.
 
     0.465
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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