STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVIR_3103Putative aminoacrylate hydrolase RutD. (256 aa)    
Predicted Functional Partners:
BVIR_2180
Ubiquinol-cytochrome C chaperone.
  
     0.670
lgrD_1
Carboxylic acid reductase.
   
 
 0.626
BVIR_307
Collagen triple helix repeat (20 copies).
  
     0.608
BVIR_1692
Hypothetical protein.
  
     0.589
cotSA_2
Spore coat protein SA.
  
    0.557
BVIR_829
Hypothetical protein.
    
  0.502
infC
Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.
       0.451
BVIR_1406
ATP12 chaperone protein.
  
     0.450
BVIR_3281
Tim44-like domain protein.
  
     0.446
BVIR_349
Alpha/beta hydrolase family protein.
  
     0.441
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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