yaeJ protein (Blastochloris viridis) - STRING interaction network

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Score

yaeJ

Peptidyl-tRNA hydrolase ArfB. (139 aa)

Predicted Functional Partners:

rplU

0.967

rpmA

0.948

rpsP_1

0.945

rpsG

0.933

rpsL

0.932

rplD

0.927

rplM_1

0.922

rplQ

0.919

rpmJ

0.919

rpmG_1

0.916

Your Current Organism:

Blastochloris viridis

NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rplD	rplM_1	BVIR_1375	BVIR_2205	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.997
rplD	rplQ	BVIR_1375	BVIR_1399	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	50S ribosomal protein L17.	0.995
rplD	rplU	BVIR_1375	BVIR_70	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.996
rplD	rpmA	BVIR_1375	BVIR_69	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.992
rplD	rpmG_1	BVIR_1375	BVIR_1594	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.	0.991
rplD	rpmJ	BVIR_1375	BVIR_769	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	50S ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.	0.992
rplD	rpsG	BVIR_1375	BVIR_1370	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.999
rplD	rpsL	BVIR_1375	BVIR_1369	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	0.999
rplD	rpsP_1	BVIR_1375	BVIR_201	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.991
rplD	yaeJ	BVIR_1375	BVIR_3139	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	Peptidyl-tRNA hydrolase ArfB.	0.927
rplM_1	rplD	BVIR_2205	BVIR_1375	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	0.997
rplM_1	rplQ	BVIR_2205	BVIR_1399	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L17.	0.995
rplM_1	rplU	BVIR_2205	BVIR_70	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.994
rplM_1	rpmA	BVIR_2205	BVIR_69	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.995
rplM_1	rpmG_1	BVIR_2205	BVIR_1594	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.	0.993
rplM_1	rpmJ	BVIR_2205	BVIR_769	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.	0.992
rplM_1	rpsG	BVIR_2205	BVIR_1370	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.996
rplM_1	rpsL	BVIR_2205	BVIR_1369	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	0.995
rplM_1	rpsP_1	BVIR_2205	BVIR_201	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.994
rplM_1	yaeJ	BVIR_2205	BVIR_3139	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Peptidyl-tRNA hydrolase ArfB.	0.922

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