STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVIR_3145Colanic acid exporter. (494 aa)    
Predicted Functional Partners:
wcaJ
UDP-glucose:undecaprenyl-phosphate glucose-1-phosphate transferase.
 
  
 0.920
BVIR_3144
ADP-L-glycero-D-manno-heptose-6-epimerase.
 
  
 0.875
BVIR_3026
O-Antigen ligase.
 
  
 0.861
tuaD_2
UDP-glucose 6-dehydrogenase TuaD.
  
  
 0.848
rfbC
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
  
 0.837
manA
Beta-mannanase/endoglucanase A precursor.
 
     0.762
BVIR_1297
Tyrosine kinase.
 
  
 0.747
BVIR_3027
Putative glycosyl transferase.
 
  
 0.723
BVIR_3023
Chain length determinant protein.
 
  
 0.701
kfoC
GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase.
 
  
 0.696
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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