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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVIR_3160Putative S-adenosylmethionine-dependent methyltransferase. (313 aa)    
Predicted Functional Partners:
BVIR_3158
Hypothetical protein.
 
    0.869
BVIR_3159
Hypothetical protein.
       0.778
BVIR_2214
EF hand.
  
     0.685
BVIR_2207
Bacterial regulatory protein, tetR family.
  
     0.683
BVIR_2999
Spermidine/putrescine ABC transporter periplasmic substrate-binding protein.
  
     0.679
yjjB
Hypothetical protein.
  
     0.644
yjjP
Inner membrane protein YjjP.
  
     0.640
BVIR_2208
Bicyclomycin/multidrug efflux system.
  
     0.525
bchD
Magnesium-chelatase 60 kDa subunit.
  
 
 0.505
yjcF
Putative N-acetyltransferase YjcF.
  
     0.439
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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