STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cysA_4Bicarbonate transport ATP-binding protein CmpD. (291 aa)    
Predicted Functional Partners:
cmpB_3
Putative aliphatic sulfonates transport permease protein SsuC.
  
 0.973
BVIR_3170
Hypothetical protein.
   
 0.930
gatA_3
Allophanate hydrolase.
 
   
 0.928
accA1_3
Acetyl-/propionyl-coenzyme A carboxylase alpha chain.
 
   
 0.926
BVIR_3173
Alkanesulfonate transporter substrate-binding subunit.
 
  
 0.923
BVIR_3169
Hypothetical protein.
 
   
 0.913
modB_1
Molybdenum transport system permease protein ModB; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
    
 0.808
ssuC_2
Putative aliphatic sulfonates transport permease protein SsuC.
  
 0.685
ssuC_1
Putative aliphatic sulfonates transport permease protein SsuC.
 
  
 0.636
bmrA
Multidrug resistance ABC transporter ATP-binding/permease protein BmrA.
 
     
0.603
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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