STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVIR_3173Alkanesulfonate transporter substrate-binding subunit. (356 aa)    
Predicted Functional Partners:
cysA_4
Bicarbonate transport ATP-binding protein CmpD.
 
  
 0.923
cmpB_3
Putative aliphatic sulfonates transport permease protein SsuC.
 
  
 0.922
accA1_3
Acetyl-/propionyl-coenzyme A carboxylase alpha chain.
 
   
 0.886
BVIR_3170
Hypothetical protein.
 
     0.879
gatA_3
Allophanate hydrolase.
 
  
 0.869
BVIR_3169
Hypothetical protein.
 
     0.868
ssuC_2
Putative aliphatic sulfonates transport permease protein SsuC.
  
  
 0.520
ssuC_1
Putative aliphatic sulfonates transport permease protein SsuC.
 
  
 0.512
gltB_1
Ferredoxin-dependent glutamate synthase 1.
   
  
 0.430
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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