STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVIR_3199GcrA cell cycle regulator. (170 aa)    
Predicted Functional Partners:
sigA
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
  
 
 
 0.831
BVIR_745
Hypothetical protein.
  
     0.692
dpnA
Modification methylase DpnIIB; Belongs to the N(4)/N(6)-methyltransferase family.
  
   
 0.652
BVIR_92
Chaperone protein DnaJ.
  
   
 0.648
hisS_2
Histidine--tRNA ligase.
  
     0.640
BVIR_304
Hypothetical protein.
  
     0.636
BVIR_3150
Bacterial SH3 domain protein.
 
     0.601
BVIR_38
Hypothetical protein.
  
     0.574
BVIR_8
Hypothetical protein.
  
     0.574
rpoH_2
RNA polymerase sigma factor RpoH; Belongs to the sigma-70 factor family.
    
 
 0.565
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.