Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BVIR_3263ABC-2 type transporter. (269 aa)    
Predicted Functional Partners:
BVIR_3262
Fluoroquinolones export ATP-binding protein.
 
  
 0.974
regB
Sensor histidine kinase RegB.
       0.627
ydjA
Putative NAD(P)H nitroreductase YdjA.
  
  
 0.570
nox
5,6-dimethylbenzimidazole synthase.
  
  
 0.570
BVIR_157
Hypothetical protein.
  
     0.539
regA
Photosynthetic apparatus regulatory protein RegA.
  
    0.527
BVIR_1455
Hypothetical protein.
 
     0.505
BVIR_3264
50S ribosomal protein L21.
       0.434
ybhF_2
Putative ABC transporter ATP-binding protein YbhF.
  
  
 0.429
ybhF_1
Putative ABC transporter ATP-binding protein YbhF.
  
  
 0.410
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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