STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVIR_326450S ribosomal protein L21. (535 aa)    
Predicted Functional Partners:
phbC_1
Poly-beta-hydroxybutyrate polymerase.
 
  
 0.984
phbC_2
Poly-beta-hydroxybutyrate polymerase.
 
  
 0.982
BVIR_147
PHB/PHA accumulation regulator DNA-binding domain protein.
 
   
 0.835
BVIR_100
Alpha/beta hydrolase family protein.
 
   
 0.718
BVIR_1458
Phasin protein.
  
   
 0.633
bdhA_1
D-beta-hydroxybutyrate dehydrogenase.
  
   
 0.543
BVIR_3265
Hypothetical protein.
       0.526
fabG_9
Acetoacetyl-CoA reductase.
  
   
 0.514
clpX
ATP-dependent Clp protease ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.
   
    0.456
BVIR_3263
ABC-2 type transporter.
       0.430
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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