Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BVIR_2028 | BVIR_328 | BVIR_2028 | BVIR_328 | Hydrogen cyanide synthase subunit HcnA. | Demethylspheroidene O-methyltransferase. | 0.429 |
BVIR_2028 | atpH | BVIR_2028 | BVIR_48 | Hydrogen cyanide synthase subunit HcnA. | ATP synthase subunit delta; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | 0.425 |
BVIR_307 | BVIR_328 | BVIR_307 | BVIR_328 | Collagen triple helix repeat (20 copies). | Demethylspheroidene O-methyltransferase. | 0.508 |
BVIR_327 | BVIR_328 | BVIR_327 | BVIR_328 | Kanosamine kinase. | Demethylspheroidene O-methyltransferase. | 0.606 |
BVIR_327 | BVIR_329 | BVIR_327 | BVIR_329 | Kanosamine kinase. | Hypothetical protein. | 0.601 |
BVIR_327 | BVIR_330 | BVIR_327 | BVIR_330 | Kanosamine kinase. | Glycosyl transferase family 2. | 0.450 |
BVIR_328 | BVIR_2028 | BVIR_328 | BVIR_2028 | Demethylspheroidene O-methyltransferase. | Hydrogen cyanide synthase subunit HcnA. | 0.429 |
BVIR_328 | BVIR_307 | BVIR_328 | BVIR_307 | Demethylspheroidene O-methyltransferase. | Collagen triple helix repeat (20 copies). | 0.508 |
BVIR_328 | BVIR_327 | BVIR_328 | BVIR_327 | Demethylspheroidene O-methyltransferase. | Kanosamine kinase. | 0.606 |
BVIR_328 | BVIR_329 | BVIR_328 | BVIR_329 | Demethylspheroidene O-methyltransferase. | Hypothetical protein. | 0.773 |
BVIR_328 | BVIR_330 | BVIR_328 | BVIR_330 | Demethylspheroidene O-methyltransferase. | Glycosyl transferase family 2. | 0.578 |
BVIR_328 | atpE | BVIR_328 | BVIR_2683 | Demethylspheroidene O-methyltransferase. | ATP synthase subunit c; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | 0.527 |
BVIR_328 | atpH | BVIR_328 | BVIR_48 | Demethylspheroidene O-methyltransferase. | ATP synthase subunit delta; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | 0.524 |
BVIR_328 | dprE1_1 | BVIR_328 | BVIR_1714 | Demethylspheroidene O-methyltransferase. | Putative decaprenylphosphoryl-beta-D-ribose oxidase. | 0.471 |
BVIR_328 | plsX | BVIR_328 | BVIR_2178 | Demethylspheroidene O-methyltransferase. | Phosphate acyltransferase; Catalyzes the reversible formation of acyl-phosphate (acyl- PO(4)) from acyl-[acyl-carrier-protein] (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA. | 0.480 |
BVIR_328 | prfA_1 | BVIR_328 | BVIR_302 | Demethylspheroidene O-methyltransferase. | Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA. | 0.901 |
BVIR_329 | BVIR_327 | BVIR_329 | BVIR_327 | Hypothetical protein. | Kanosamine kinase. | 0.601 |
BVIR_329 | BVIR_328 | BVIR_329 | BVIR_328 | Hypothetical protein. | Demethylspheroidene O-methyltransferase. | 0.773 |
BVIR_329 | BVIR_330 | BVIR_329 | BVIR_330 | Hypothetical protein. | Glycosyl transferase family 2. | 0.567 |
BVIR_330 | BVIR_327 | BVIR_330 | BVIR_327 | Glycosyl transferase family 2. | Kanosamine kinase. | 0.450 |
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