STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
menE_1Putative sulfoacetate--CoA ligase. (727 aa)    
Predicted Functional Partners:
tycC_2
Tyrocidine synthase 3.
 
 
 0.934
acpP_1
Acyl carrier protein.
  
   0.826
BVIR_335
Antilisterial bacteriocin subtilosin biosynthesis protein AlbA.
       0.773
BVIR_336
B12 binding domain protein.
       0.773
BVIR_331
2'-N-acetylparomamine deacetylase.
       0.751
fabG_1
3-oxoacyl-[acyl-carrier-protein] reductase FabG.
       0.750
BVIR_337
Type I phosphodiesterase / nucleotide pyrophosphatase.
       0.746
lgrD_1
Carboxylic acid reductase.
 
 
 0.722
fadD_1
Long-chain-fatty-acid--CoA ligase.
  
     0.705
hoxF
NAD-reducing hydrogenase HoxS subunit alpha.
    
   0.695
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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