STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVIR_336B12 binding domain protein. (583 aa)    
Predicted Functional Partners:
BVIR_768
V4R domain protein.
 
 
 0.989
BVIR_1991
Ribosomal protein S12 methylthiotransferase RimO.
  
  
 
0.929
bchM
Magnesium-protoporphyrin O-methyltransferase.
  
 
 0.909
BVIR_335
Antilisterial bacteriocin subtilosin biosynthesis protein AlbA.
  
  
 0.795
menE_1
Putative sulfoacetate--CoA ligase.
       0.773
BVIR_331
2'-N-acetylparomamine deacetylase.
  
    0.756
fabG_1
3-oxoacyl-[acyl-carrier-protein] reductase FabG.
  
    0.748
acpP_1
Acyl carrier protein.
  
    0.748
BVIR_337
Type I phosphodiesterase / nucleotide pyrophosphatase.
       0.746
BVIR_2350
Hypothetical protein.
   
    0.558
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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