Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BVIR_336B12 binding domain protein. (583 aa)    
Predicted Functional Partners:
BVIR_768
V4R domain protein.
 
  
 0.921
BVIR_335
Antilisterial bacteriocin subtilosin biosynthesis protein AlbA.
  
  
 0.796
menE_1
Putative sulfoacetate--CoA ligase.
       0.773
BVIR_331
2'-N-acetylparomamine deacetylase.
  
    0.752
fabG_1
3-oxoacyl-[acyl-carrier-protein] reductase FabG.
  
    0.748
acpP_1
Acyl carrier protein.
  
    0.747
BVIR_337
Type I phosphodiesterase / nucleotide pyrophosphatase.
       0.746
BVIR_338
Type I phosphodiesterase / nucleotide pyrophosphatase.
       0.530
bchB
Light-independent protochlorophyllide reductase subunit B; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex.
   
  
 0.523
BVIR_566
Protoheme IX farnesyltransferase.
 
  
 0.495
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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