STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVIR_340N-acetylneuraminate epimerase. (298 aa)    
Predicted Functional Partners:
gph_1
Phosphoglycolate phosphatase.
       0.773
BVIR_341
Hypothetical protein.
       0.718
BVIR_338
Type I phosphodiesterase / nucleotide pyrophosphatase.
       0.686
menE_1
Putative sulfoacetate--CoA ligase.
 
     0.537
atpE
ATP synthase subunit c; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
  
     0.528
BVIR_337
Type I phosphodiesterase / nucleotide pyrophosphatase.
       0.491
BVIR_335
Antilisterial bacteriocin subtilosin biosynthesis protein AlbA.
       0.476
BVIR_336
B12 binding domain protein.
       0.476
BVIR_331
2'-N-acetylparomamine deacetylase.
       0.462
fabG_1
3-oxoacyl-[acyl-carrier-protein] reductase FabG.
       0.462
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.