STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ycjSPutative UDP-kanosamine synthase oxidoreductase subunit. (344 aa)    
Predicted Functional Partners:
btrR
3-amino-5-hydroxybenzoate synthase; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.810
BVIR_2561
Xylose isomerase-like TIM barrel.
  
  
 0.733
dgoA
2-dehydro-3-deoxy-6-phosphogalactonate aldolase.
 
  
 0.724
ydjH
2-dehydro-3-deoxygluconokinase.
 
  
 0.626
BVIR_1971
Capsule polysaccharide biosynthesis protein.
  
  
 0.526
arnB
UDP-2-acetamido-2-deoxy-3-oxo-D-glucuronate aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.524
afr_2
1,5-anhydro-D-fructose reductase.
  
     0.514
BVIR_3193
Bifunctional IPC transferase and DIPP synthase.
  
    0.481
guaB
Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
   
  
 0.476
proA_1
4-hydroxy-4-methyl-2-oxoglutarate aldolase.
 
  
 0.473
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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