STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dgoA2-dehydro-3-deoxy-6-phosphogalactonate aldolase. (212 aa)    
Predicted Functional Partners:
ydjH
2-dehydro-3-deoxygluconokinase.
 
  
 0.790
ycjS
Putative UDP-kanosamine synthase oxidoreductase subunit.
 
  
 0.724
glk
Glucokinase; Belongs to the bacterial glucokinase family.
 
  
 0.699
kdgR_1
Pectin degradation repressor protein KdgR.
 
   
 0.613
ydfH
Putative HTH-type transcriptional regulator YdfH.
 
   
 0.606
ilvD
Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
  
  
 0.566
pgi_1
Glucose-6-phosphate isomerase.
  
  
 0.501
pyk
Pyruvate kinase; Belongs to the pyruvate kinase family.
     
 0.490
tme
NADP-dependent malic enzyme.
   
  
 0.462
gap
Glyceraldehyde-3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
  
  
 0.426
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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