STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydjH2-dehydro-3-deoxygluconokinase. (309 aa)    
Predicted Functional Partners:
rpe_1
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
  
 0.868
dgoA
2-dehydro-3-deoxy-6-phosphogalactonate aldolase.
 
  
 0.790
hisA_1
1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase.
  
    0.650
ycjS
Putative UDP-kanosamine synthase oxidoreductase subunit.
 
  
 0.626
BVIR_2561
Xylose isomerase-like TIM barrel.
  
  
 0.561
tme
NADP-dependent malic enzyme.
  
  
 0.535
BVIR_438
Hypothetical protein.
       0.522
porB
Pyruvate-flavodoxin oxidoreductase.
     
 0.507
afr_1
1,5-anhydro-D-fructose reductase.
 
  
 0.471
gltB_1
Ferredoxin-dependent glutamate synthase 1.
    
 
 0.459
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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