STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVIR_44Hypothetical protein. (268 aa)    
Predicted Functional Partners:
BVIR_43
TPR repeat-containing protein YfgC precursor.
 
     0.857
BVIR_1455
Hypothetical protein.
  
     0.638
BVIR_481
Hypothetical protein.
  
     0.565
BVIR_3216
Hypothetical protein.
  
     0.535
BVIR_2585
Flagellar hook-length control protein FliK.
  
     0.529
BVIR_2590
Flagellar assembly protein H.
  
     0.526
BVIR_991
Chemotactic signal-response protein CheL.
  
     0.526
BVIR_2596
Hypothetical protein.
  
     0.508
BVIR_1003
Hypothetical protein.
  
 
   0.504
BVIR_213
Hypothetical protein.
  
     0.499
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.