STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVIR_447Transcriptional regulator SlyA. (172 aa)    
Predicted Functional Partners:
omp2b
Porin omp2b precursor; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
     0.561
crnA
Creatinine amidohydrolase.
       0.529
BVIR_961
Apolipoprotein A1/A4/E domain protein.
  
     0.489
BVIR_2207
Bacterial regulatory protein, tetR family.
  
     0.482
yofA_1
HTH-type transcriptional regulator YofA; Belongs to the LysR transcriptional regulatory family.
  
    0.479
aes
Carboxylesterase NlhH.
  
     0.464
BVIR_827
Hypothetical protein.
  
   
 0.462
BVIR_446
EamA-like transporter family protein.
       0.458
BVIR_2813
Phasin protein.
  
     0.441
BVIR_2814
Phasin protein.
  
     0.415
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.