Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
BVIR_447Transcriptional regulator SlyA. (172 aa)    
Predicted Functional Partners:
omp2b
Porin omp2b precursor; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
   
 0.569
crnA
Creatinine amidohydrolase.
       0.531
BVIR_961
Apolipoprotein A1/A4/E domain protein.
  
     0.489
yofA_1
HTH-type transcriptional regulator YofA; Belongs to the LysR transcriptional regulatory family.
  
  
 0.486
BVIR_2207
Bacterial regulatory protein, tetR family.
  
     0.482
aes
Carboxylesterase NlhH.
  
     0.464
BVIR_446
EamA-like transporter family protein.
       0.458
BVIR_827
Hypothetical protein.
  
     0.450
BVIR_2813
Phasin protein.
  
     0.441
BVIR_2814
Phasin protein.
  
     0.415
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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