STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BVIR_4882,3-diketo-L-gulonate TRAP transporter small permease protein YiaM. (212 aa)    
Predicted Functional Partners:
siaT_1
Sialic acid TRAP transporter permease protein SiaT.
 
 0.996
dctP_1
C4-dicarboxylate-binding periplasmic protein precursor.
 
  
 0.927
siaT_3
Sialic acid TRAP transporter permease protein SiaT.
 
 0.923
BVIR_773
Tripartite ATP-independent periplasmic transporters, DctQ component.
   
 
  0.905
BVIR_1150
Tripartite ATP-independent periplasmic transporters, DctQ component.
     
  0.900
siaT_2
Sialic acid TRAP transporter permease protein SiaT.
     
  0.900
siaT_5
Sialic acid TRAP transporter permease protein SiaT.
 
 0.874
yiaO_1
2,3-diketo-L-gulonate-binding periplasmic protein YiaO precursor.
 
  
 0.765
yiaO_2
2,3-diketo-L-gulonate-binding periplasmic protein YiaO precursor.
 
  
 0.708
BVIR_2471
Dihem cytochrome c.
  
     0.535
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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