STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
crtN_1Phytoene desaturase (neurosporene-forming). (511 aa)    
Predicted Functional Partners:
crtM
15-cis-phytoene synthase.
 
 0.998
BVIR_1565
All-trans-phytoene synthase.
  
 
 0.962
crtN_2
Phytoene desaturase (neurosporene-forming).
  
  
 
0.900
bchD
Magnesium-chelatase 60 kDa subunit.
  
  
 0.794
bchI
Magnesium-chelatase 38 kDa subunit; Involved in bacteriochlorophyll biosynthesis; introduces a magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX.
  
  
 0.622
BVIR_592
Soluble epoxide hydrolase.
 
    0.609
BVIR_595
Hypothetical protein.
       0.581
BVIR_569
2-vinyl bacteriochlorophyllide hydratase (BCHF).
 
  
 0.464
phrB
Deoxyribodipyrimidine photo-lyase; Belongs to the DNA photolyase family.
 
  
 0.439
BVIR_564
Putative oxidoreductase.
 
  
 0.439
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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