STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVIR_610Universal stress protein family protein. (165 aa)    
Predicted Functional Partners:
BVIR_3066
Putative transmembrane protein (Alph_Pro_TM).
 
     0.813
BVIR_3065
Hypothetical protein.
 
   
 0.805
BVIR_2179
Hypothetical protein.
  
     0.627
trpS
Tryptophan--tRNA ligase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
     
 0.621
BVIR_95
Hypothetical protein.
  
     0.576
nfuA
Fe/S biogenesis protein NfuA.
     
 0.546
BVIR_263
Disulfide bond formation protein B.
  
     0.537
pleC_1
Non-motile and phage-resistance protein.
 
   
 0.517
BVIR_2442
Membrane fusogenic activity.
  
     0.516
BVIR_2247
Hypothetical protein.
  
     0.512
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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