Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BVIR_655 | amtB_1 | BVIR_655 | BVIR_654 | Hypothetical protein. | Ammonia channel precursor. | 0.456 |
BVIR_655 | panB_1 | BVIR_655 | BVIR_657 | Hypothetical protein. | 3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family. | 0.476 |
BVIR_655 | yhhT_1 | BVIR_655 | BVIR_656 | Hypothetical protein. | Hypothetical protein. | 0.757 |
amtB_1 | BVIR_655 | BVIR_654 | BVIR_655 | Ammonia channel precursor. | Hypothetical protein. | 0.456 |
amtB_1 | yhhT_1 | BVIR_654 | BVIR_656 | Ammonia channel precursor. | Hypothetical protein. | 0.447 |
panB_1 | BVIR_655 | BVIR_657 | BVIR_655 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family. | Hypothetical protein. | 0.476 |
panB_1 | yhhT_1 | BVIR_657 | BVIR_656 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family. | Hypothetical protein. | 0.503 |
yhhT_1 | BVIR_655 | BVIR_656 | BVIR_655 | Hypothetical protein. | Hypothetical protein. | 0.757 |
yhhT_1 | amtB_1 | BVIR_656 | BVIR_654 | Hypothetical protein. | Ammonia channel precursor. | 0.447 |
yhhT_1 | panB_1 | BVIR_656 | BVIR_657 | Hypothetical protein. | 3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family. | 0.503 |