STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVIR_706Long-chain-fatty-acid--CoA ligase FadD15. (663 aa)    
Predicted Functional Partners:
ecfA1
Energy-coupling factor transporter ATP-binding protein EcfA3.
    0.961
fadK
Putative acyl--CoA ligase YhfT.
 
 
 0.926
fadD_2
Long-chain-fatty-acid--CoA ligase.
 
 
0.912
livH_3
High-affinity branched-chain amino acid transport system permease protein LivH; Belongs to the binding-protein-dependent transport system permease family.
 
    0.880
BVIR_710
Hypothetical protein.
 
    0.865
BVIR_709
Leucine/isoleucine/valine transporter permease subunit; Belongs to the binding-protein-dependent transport system permease family.
 
    0.849
livF_2
High-affinity branched-chain amino acid transport ATP-binding protein LivF.
    0.841
paaK_3
Phenylacetate-coenzyme A ligase.
 
    0.814
lgrD_1
Carboxylic acid reductase.
 
   
0.548
BVIR_2156
Putative 3-hydroxyacyl-CoA dehydrogenase.
  
 
 0.481
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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