STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
paaK_3Phenylacetate-coenzyme A ligase. (413 aa)    
Predicted Functional Partners:
paaI_1
Acyl-coenzyme A thioesterase PaaI.
 
 
 0.938
paaK_1
Phenylacetate-coenzyme A ligase.
  
  
 
0.926
paaK_2
Phenylacetate-coenzyme A ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
  
  
 
0.926
gatA_2
Acylamidase.
    
  0.902
livF_2
High-affinity branched-chain amino acid transport ATP-binding protein LivF.
 
    0.871
BVIR_710
Hypothetical protein.
 
    0.842
BVIR_709
Leucine/isoleucine/valine transporter permease subunit; Belongs to the binding-protein-dependent transport system permease family.
 
    0.821
BVIR_706
Long-chain-fatty-acid--CoA ligase FadD15.
 
    0.814
ecfA1
Energy-coupling factor transporter ATP-binding protein EcfA3.
 
    0.786
livH_3
High-affinity branched-chain amino acid transport system permease protein LivH; Belongs to the binding-protein-dependent transport system permease family.
 
    0.774
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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