Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BVIR_720Hypothetical protein. (136 aa)    
Predicted Functional Partners:
BVIR_719
Phosphotransferase enzyme family protein.
 
     0.709
fixL_2
Sensor protein FixL.
  
     0.629
BVIR_2880
Cbb3-type cytochrome oxidase component FixQ.
  
     0.568
BVIR_139
Ribosomal protein L11 methyltransferase.
  
     0.466
BVIR_161
Hypothetical protein.
  
     0.452
fixJ_2
Response regulator protein TodT.
  
   
 0.446
omp2b
Porin omp2b precursor; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
     0.441
fixJ_3
Response regulator protein TmoT.
  
   
 0.423
BVIR_986
Hypothetical protein.
  
     0.408
BVIR_2370
Hypothetical protein.
  
     0.405
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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