Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ydaDGeneral stress protein 39. (253 aa)    
Predicted Functional Partners:
lgrD_1
Carboxylic acid reductase.
  
 
 0.824
BVIR_760
Glycosyl transferase family 2.
   
   0.791
yciK
Putative oxidoreductase YciK.
  
 
   0.590
BVIR_1169
Putative oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
    0.566
BVIR_2141
Putative oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.539
phaJ_1
(R)-specific enoyl-CoA hydratase.
 
 0.532
fabG_4
3-oxoacyl-[acyl-carrier-protein] reductase FabG; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.526
tycC_2
Tyrocidine synthase 3.
  
 
 0.408
ydfG_2
Sulfoacetaldehyde reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.406
gltB_1
Ferredoxin-dependent glutamate synthase 1.
      
 0.405
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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