STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gmr_5Cyclic di-GMP phosphodiesterase Gmr. (963 aa)    
Predicted Functional Partners:
pleD_1
Response regulator PleD.
 
 0.839
dosC
Putative diguanylate cyclase YegE.
 
 
 0.837
cph2_5
Phytochrome-like protein cph2.
 
 
0.821
BVIR_1662
Blue-light-activated histidine kinase.
 
  
 0.820
cph2_1
Phytochrome-like protein cph2.
 
 
0.803
gmr_2
Cyclic di-GMP phosphodiesterase Gmr.
 
 
 
0.791
cheA_1
Chemotaxis protein CheA.
  
 
 0.782
BVIR_1012
Blue-light-activated protein.
 
 
 0.725
BVIR_1772
Hypothetical protein.
  
     0.693
barA
Signal transduction histidine-protein kinase BarA.
 
 
 0.691
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.