STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVIR_791Hypothetical protein. (175 aa)    
Predicted Functional Partners:
rpiA_1
Ribose-5-phosphate isomerase A; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
       0.796
BVIR_961
Apolipoprotein A1/A4/E domain protein.
  
     0.765
omp2b
Porin omp2b precursor; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
     0.758
BVIR_3075
Hypothetical protein.
  
     0.745
BVIR_766
Hypothetical protein.
  
     0.739
BVIR_37
Hypothetical protein.
  
     0.718
BVIR_1772
Hypothetical protein.
  
     0.709
BVIR_481
Hypothetical protein.
  
     0.693
BVIR_1502
Invasion associated locus B (IalB) protein.
  
     0.676
BVIR_161
Hypothetical protein.
  
     0.669
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.