Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| BVIR_3149 | gph_2 | BVIR_3149 | BVIR_793 | Glycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | Phosphoglycolate phosphatase, chromosomal; Specifically catalyzes the dephosphorylation of 2- phosphoglycolate. Is involved in the dissimilation of the intracellular 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends, a major class of DNA lesions induced by oxidative stress. Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family. | 0.901 |
| BVIR_3149 | gph_4 | BVIR_3149 | BVIR_1899 | Glycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | Phosphoglycolate phosphatase. | 0.901 |
| BVIR_3149 | ppaX | BVIR_3149 | BVIR_1405 | Glycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | Pyrophosphatase PpaX. | 0.901 |
| BVIR_791 | gph_2 | BVIR_791 | BVIR_793 | Hypothetical protein. | Phosphoglycolate phosphatase, chromosomal; Specifically catalyzes the dephosphorylation of 2- phosphoglycolate. Is involved in the dissimilation of the intracellular 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends, a major class of DNA lesions induced by oxidative stress. Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family. | 0.613 |
| BVIR_791 | rpiA_1 | BVIR_791 | BVIR_792 | Hypothetical protein. | Ribose-5-phosphate isomerase A; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate. | 0.796 |
| cbbL | cbxSC | BVIR_587 | BVIR_586 | Ribulose bisphosphate carboxylase large chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type I subfamily. | Ribulose bisphosphate carboxylase small chain, chromosomal. | 0.999 |
| cbbL | gph_2 | BVIR_587 | BVIR_793 | Ribulose bisphosphate carboxylase large chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type I subfamily. | Phosphoglycolate phosphatase, chromosomal; Specifically catalyzes the dephosphorylation of 2- phosphoglycolate. Is involved in the dissimilation of the intracellular 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends, a major class of DNA lesions induced by oxidative stress. Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family. | 0.913 |
| cbbL | gph_4 | BVIR_587 | BVIR_1899 | Ribulose bisphosphate carboxylase large chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type I subfamily. | Phosphoglycolate phosphatase. | 0.903 |
| cbbL | ppaX | BVIR_587 | BVIR_1405 | Ribulose bisphosphate carboxylase large chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type I subfamily. | Pyrophosphatase PpaX. | 0.903 |
| cbbL | rlp2 | BVIR_587 | BVIR_1439 | Ribulose bisphosphate carboxylase large chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type I subfamily. | Ribulose bisphosphate carboxylase-like protein 2; Belongs to the RuBisCO large chain family. | 0.926 |
| cbxSC | cbbL | BVIR_586 | BVIR_587 | Ribulose bisphosphate carboxylase small chain, chromosomal. | Ribulose bisphosphate carboxylase large chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type I subfamily. | 0.999 |
| cbxSC | gph_2 | BVIR_586 | BVIR_793 | Ribulose bisphosphate carboxylase small chain, chromosomal. | Phosphoglycolate phosphatase, chromosomal; Specifically catalyzes the dephosphorylation of 2- phosphoglycolate. Is involved in the dissimilation of the intracellular 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends, a major class of DNA lesions induced by oxidative stress. Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family. | 0.924 |
| cbxSC | gph_4 | BVIR_586 | BVIR_1899 | Ribulose bisphosphate carboxylase small chain, chromosomal. | Phosphoglycolate phosphatase. | 0.908 |
| cbxSC | ppaX | BVIR_586 | BVIR_1405 | Ribulose bisphosphate carboxylase small chain, chromosomal. | Pyrophosphatase PpaX. | 0.908 |
| cbxSC | rlp2 | BVIR_586 | BVIR_1439 | Ribulose bisphosphate carboxylase small chain, chromosomal. | Ribulose bisphosphate carboxylase-like protein 2; Belongs to the RuBisCO large chain family. | 0.995 |
| cbxSC | rpe_1 | BVIR_586 | BVIR_580 | Ribulose bisphosphate carboxylase small chain, chromosomal. | Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family. | 0.475 |
| gph_1 | gph_2 | BVIR_339 | BVIR_793 | Phosphoglycolate phosphatase. | Phosphoglycolate phosphatase, chromosomal; Specifically catalyzes the dephosphorylation of 2- phosphoglycolate. Is involved in the dissimilation of the intracellular 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends, a major class of DNA lesions induced by oxidative stress. Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family. | 0.682 |
| gph_2 | BVIR_3149 | BVIR_793 | BVIR_3149 | Phosphoglycolate phosphatase, chromosomal; Specifically catalyzes the dephosphorylation of 2- phosphoglycolate. Is involved in the dissimilation of the intracellular 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends, a major class of DNA lesions induced by oxidative stress. Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family. | Glycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | 0.901 |
| gph_2 | BVIR_791 | BVIR_793 | BVIR_791 | Phosphoglycolate phosphatase, chromosomal; Specifically catalyzes the dephosphorylation of 2- phosphoglycolate. Is involved in the dissimilation of the intracellular 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends, a major class of DNA lesions induced by oxidative stress. Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family. | Hypothetical protein. | 0.613 |
| gph_2 | cbbL | BVIR_793 | BVIR_587 | Phosphoglycolate phosphatase, chromosomal; Specifically catalyzes the dephosphorylation of 2- phosphoglycolate. Is involved in the dissimilation of the intracellular 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends, a major class of DNA lesions induced by oxidative stress. Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family. | Ribulose bisphosphate carboxylase large chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type I subfamily. | 0.913 |
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