Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BVIR_819Blue-light-activated histidine kinase. (810 aa)    
Predicted Functional Partners:
barA
Signal transduction histidine-protein kinase BarA.
 
 0.835
pdtaR_2
Putative transcriptional regulatory protein pdtaR.
 
 
 0.830
BVIR_1012
Blue-light-activated protein.
 
 
 0.809
BVIR_733
Blue-light-activated histidine kinase 1.
 
 
 
0.773
gmr_2
Cyclic di-GMP phosphodiesterase Gmr.
   
 
 0.770
pleC_1
Non-motile and phage-resistance protein.
  
 
 0.763
cheA_1
Chemotaxis protein CheA.
  
 
 0.757
BVIR_3064
Blue-light-activated protein.
 
 
 0.752
cph2_5
Phytochrome-like protein cph2.
  
 
 0.734
BVIR_1662
Blue-light-activated histidine kinase.
 
  
0.734
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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