Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
oatA_1O-acetyltransferase OatA. (341 aa)    
Predicted Functional Partners:
wcaJ
UDP-glucose:undecaprenyl-phosphate glucose-1-phosphate transferase.
     
 0.636
BVIR_1297
Tyrosine kinase.
     
 0.572
BVIR_876
Hypothetical protein.
       0.500
gtaB_1
UTP--glucose-1-phosphate uridylyltransferase.
     
 0.452
phoR_1
Alkaline phosphatase synthesis sensor protein PhoR.
   
  
 0.423
BVIR_852
Succinoglycan biosynthesis protein ExoI.
   
  
 0.415
ros
Transcriptional regulatory protein MucR.
      
 0.406
BVIR_1543
Sel1 repeat protein.
      
 0.404
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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