STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hxuC_1Heme/hemopexin utilization protein C precursor. (872 aa)    
Predicted Functional Partners:
BVIR_884
Fec operon regulator FecR.
 
  
 0.897
BVIR_1870
Fec operon regulator FecR.
 
  
 0.811
BVIR_1874
Fec operon regulator FecR.
 
  
 0.805
fecA_1
Fe(3+) dicitrate transport protein FecA precursor.
 
 
 0.803
BVIR_2095
Fec operon regulator FecR.
 
  
 0.798
hmuT_1
Hemin-binding periplasmic protein HmuT precursor.
 
  
 0.789
BVIR_2526
Gram-negative bacterial tonB protein.
 
 
 0.770
fecI_2
Putative RNA polymerase sigma factor FecI; Belongs to the sigma-70 factor family. ECF subfamily.
  
  
 0.739
BVIR_2196
Heme oxygenase.
 
   
 0.703
fecI_3
Putative RNA polymerase sigma factor FecI; Belongs to the sigma-70 factor family. ECF subfamily.
  
  
 0.696
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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