STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cobTAerobic cobaltochelatase subunit CobT. (638 aa)    
Predicted Functional Partners:
cobS-2
Aerobic cobaltochelatase subunit CobS.
 
 
 0.995
cobN_2
Aerobic cobaltochelatase subunit CobN.
     
 0.912
cobB_2
Cobyrinic acid A,C-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of hydrogenobyrinate, using either L- glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family.
     
  0.900
BVIR_92
Chaperone protein DnaJ.
 
     0.830
BVIR_95
Hypothetical protein.
       0.812
BVIR_3194
PD-(D/E)XK nuclease superfamily protein.
  
     0.582
BVIR_296
Hypothetical protein.
  
     0.537
BVIR_740
Hypothetical protein; Belongs to the UPF0262 family.
  
     0.533
BVIR_2442
Membrane fusogenic activity.
  
     0.523
BVIR_38
Hypothetical protein.
  
     0.507
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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