Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ycjGL-Ala-D/L-Glu epimerase. (331 aa)    
Predicted Functional Partners:
BVIR_956
Hypothetical protein.
  
  0.996
ykfB
L-Ala-D/L-Glu epimerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
  
  
 
0.923
mlaE
Putative phospholipid ABC transporter permease protein MlaE.
       0.667
BVIR_958
Putative ABC transporter ATP-binding protein.
       0.659
BVIR_959
Mce related protein.
       0.584
ymdB
O-acetyl-ADP-ribose deacetylase.
   
   0.520
BVIR_960
Hypothetical protein.
       0.517
ykfC
Gamma-D-glutamyl-L-lysine endopeptidase.
 
  
 0.504
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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