STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVIR_96Peptidase M15. (579 aa)    
Predicted Functional Partners:
BVIR_97
Murein L,D-transpeptidase.
 
     0.862
BVIR_824
Murein L,D-transpeptidase.
 
     0.771
mepA_1
Penicillin-insensitive murein endopeptidase precursor.
  
     0.746
BVIR_3140
Putative metallo-hydrolase.
  
    0.675
ycjF
Hypothetical protein.
  
     0.537
BVIR_797
Hypothetical protein.
  
     0.525
ycjX
Hypothetical protein.
  
     0.490
BVIR_284
Hypothetical protein.
  
    0.477
gloB
Hydroxyacylglutathione hydrolase; Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid.
  
    0.471
ytnP
Putative quorum-quenching lactonase YtnP.
  
    0.470
Your Current Organism:
Blastochloris viridis
NCBI taxonomy Id: 1079
Other names: ATCC 19567, B. viridis, CCUG 30818, CCUG 7830, DSM 133, LMG 4321, LMG:4321, NBRC 102659, Rhodopseudomonas viridis, strain G. Drews F
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